IL_8CAM_108

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAM_108 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0517

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CAM|1|a|U|1851
8CAM|1|a|U|1852
8CAM|1|a|A|1853
8CAM|1|a|A|1854
8CAM|1|a|U|1855
8CAM|1|a|U|1856
8CAM|1|a|G|1857
8CAM|1|a|A|1858
8CAM|1|a|U|1859
8CAM|1|a|G|1860
*
8CAM|1|a|U|1882
8CAM|1|a|U|1883
8CAM|1|a|G|1884
8CAM|1|a|A|1885
8CAM|1|a|U|1886
8CAM|1|a|C|1887
8CAM|1|a|G|1888
8CAM|1|a|A|1889
8CAM|1|a|A|1890
8CAM|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains