IL_8CAS_037

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8CAS|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAS_037 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1434

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8CAS|1|2|G|616
8CAS|1|2|U|617
8CAS|1|2|U|618
8CAS|1|2|A|619
8CAS|1|2|A|620
8CAS|1|2|A|621
8CAS|1|2|A|622
*
8CAS|1|2|U|1104
8CAS|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-A