IL_8CAS_039
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAS_039 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0874
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8CAS|1|2|C|627
8CAS|1|2|G|628
8CAS|1|2|U|629
8CAS|1|2|A|630
8CAS|1|2|G|631
*
8CAS|1|2|U|968
8CAS|1|2|C|969
8CAS|1|2|A|970
8CAS|1|2|A|971
8CAS|1|2|G|972
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- 40S ribosomal protein S22-A
- Chain c
- 40S ribosomal protein S23-A
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
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