IL_8CAS_071

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

8CAS|1|2|U|1432, 8CAS|1|2|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAS_071 not in the Motif Atlas

Homologous match to IL_4V88_451

Geometric discrepancy: 0.1191

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8CAS|1|2|U|1276
8CAS|1|2|G|1277
8CAS|1|2|G|1278
*
8CAS|1|2|U|1430
8CAS|1|2|C|1431
8CAS|1|2|U|1432
8CAS|1|2|G|1433
8CAS|1|2|U|1434
8CAS|1|2|G|1435
8CAS|1|2|A|1436

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3

Chain D

40S ribosomal protein S10-A

Chain L

40S ribosomal protein S20

Chain N

RPS29A isoform 1