IL_8CBJ_019
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8CBJ|1|2|U|313, 8CBJ|1|2|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_019 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.1139
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8CBJ|1|2|U|311
8CBJ|1|2|A|312
8CBJ|1|2|U|313
8CBJ|1|2|C|314
8CBJ|1|2|A|315
8CBJ|1|2|A|316
*
8CBJ|1|2|U|348
8CBJ|1|2|U|349
8CBJ|1|2|U|350
8CBJ|1|2|C|351
8CBJ|1|2|A|352
8CBJ|1|2|A|353
8CBJ|1|2|C|354
8CBJ|1|2|G|355
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S8-A
- Chain L
- 40S ribosomal protein S11-A
- Chain X
- 40S ribosomal protein S23-A
- Chain k
- TSR1 isoform 1
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