IL_8CBJ_054
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_054 not in the Motif Atlas
- Geometric match to IL_4V88_432
- Geometric discrepancy: 0.1334
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8CBJ|1|2|G|885
8CBJ|1|2|U|886
8CBJ|1|2|A|887
8CBJ|1|2|U|888
*
8CBJ|1|2|A|924
8CBJ|1|2|G|925
8CBJ|1|2|A|926
8CBJ|1|2|C|927
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S1-A
- Chain O
- 40S ribosomal protein S14-A
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