IL_8CBJ_062

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAA*UUU

Length

7 nucleotides

Bulged bases

8CBJ|1|2|G|1150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_062 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.1729

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8CBJ|1|2|G|1149
8CBJ|1|2|G|1150
8CBJ|1|2|A|1151
8CBJ|1|2|A|1152
*
8CBJ|1|2|U|1626
8CBJ|1|2|U|1627
8CBJ|1|2|U|1628

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain h

Pre-rRNA-processing protein PNO1

Chain l

non-specific serine/threonine protein kinase