IL_8CBJ_063
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8CBJ|1|2|C|1158, 8CBJ|1|2|C|1159
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_063 not in the Motif Atlas
- Geometric match to IL_4V88_443
- Geometric discrepancy: 0.2014
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
8CBJ|1|2|A|1157
8CBJ|1|2|C|1158
8CBJ|1|2|C|1159
8CBJ|1|2|A|1160
*
8CBJ|1|2|U|1617
8CBJ|1|2|C|1618
8CBJ|1|2|C|1619
8CBJ|1|2|C|1620
8CBJ|1|2|U|1621
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain U
- 40S ribosomal protein S20
- Chain c
- 40S ribosomal protein S28-A
- Chain h
- Pre-rRNA-processing protein PNO1
- Chain l
- non-specific serine/threonine protein kinase
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