IL_8CBJ_098
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCUAAC*GCGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_098 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3068
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CBJ|1|2|G|703
8CBJ|1|2|C|704
8CBJ|1|2|U|705
8CBJ|1|2|A|706
8CBJ|1|2|A|707
8CBJ|1|2|C|708
*
8CBJ|1|2|G|730
8CBJ|1|2|C|731
8CBJ|1|2|G|732
8CBJ|1|2|A|733
8CBJ|1|2|A|734
8CBJ|1|2|C|735
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6-B
Coloring options: