IL_8CCS_125

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

8CCS|1|AA|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_125 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.074

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8CCS|1|AA|U|3047
8CCS|1|AA|A|3048
8CCS|1|AA|A|3049
8CCS|1|AA|U|3050
8CCS|1|AA|U|3051
*
8CCS|1|AA|A|3091
8CCS|1|AA|C|3092
8CCS|1|AA|C|3093
8CCS|1|AA|A|3094

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A

Chain I

60S ribosomal protein L24-A