IL_8CCS_171

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8CCS|1|c|U|313, 8CCS|1|c|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_171 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0617

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8CCS|1|c|U|311
8CCS|1|c|A|312
8CCS|1|c|U|313
8CCS|1|c|C|314
8CCS|1|c|A|315
8CCS|1|c|A|316
*
8CCS|1|c|U|348
8CCS|1|c|U|349
8CCS|1|c|U|350
8CCS|1|c|C|351
8CCS|1|c|A|352
8CCS|1|c|A|353
8CCS|1|c|C|354
8CCS|1|c|G|355

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A

Chain z

40S ribosomal protein S23-A