3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
8CDL|1|AA|U|534, 8CDL|1|AA|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CDL_021 not in the Motif Atlas
Homologous match to IL_5TBW_020
Geometric discrepancy: 0.1231
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8CDL|1|AA|G|531
8CDL|1|AA|A|532
8CDL|1|AA|A|533
8CDL|1|AA|U|534
8CDL|1|AA|G|535
8CDL|1|AA|U|536
8CDL|1|AA|A|537
8CDL|1|AA|G|538
*
8CDL|1|AA|U|553
8CDL|1|AA|A|554
8CDL|1|AA|U|555
8CDL|1|AA|U|556
8CDL|1|AA|A|557
8CDL|1|AA|U|558
8CDL|1|AA|A|559
8CDL|1|AA|G|560
8CDL|1|AA|C|561

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain E
60S ribosomal protein L20-A
Chain PP
60S ribosomal protein L14-A

Coloring options:


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