IL_8CDL_021

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8CDL|1|AA|U|534, 8CDL|1|AA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1231

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CDL|1|AA|G|531
8CDL|1|AA|A|532
8CDL|1|AA|A|533
8CDL|1|AA|U|534
8CDL|1|AA|G|535
8CDL|1|AA|U|536
8CDL|1|AA|A|537
8CDL|1|AA|G|538
*
8CDL|1|AA|U|553
8CDL|1|AA|A|554
8CDL|1|AA|U|555
8CDL|1|AA|U|556
8CDL|1|AA|A|557
8CDL|1|AA|U|558
8CDL|1|AA|A|559
8CDL|1|AA|G|560
8CDL|1|AA|C|561

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L20-A

Chain PP

60S ribosomal protein L14-A