IL_8CDL_050

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UUUG*C(A2M)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_050 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.252

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8CDL|1|AA|U|1123
8CDL|1|AA|U|1124
8CDL|1|AA|U|1125
8CDL|1|AA|G|1126
*
8CDL|1|AA|C|1132
8CDL|1|AA|A2M|1133
8CDL|1|AA|G|1134
8CDL|1|AA|A|1135

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L21-A

Chain MM

60S ribosomal protein L10

Chain N

60S ribosomal protein L29