IL_8CDL_065
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_065 not in the Motif Atlas
- Homologous match to IL_5TBW_062
- Geometric discrepancy: 0.0892
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8CDL|1|AA|G|1500
8CDL|1|AA|U|1501
8CDL|1|AA|C|1502
8CDL|1|AA|A|1503
8CDL|1|AA|A|1504
8CDL|1|AA|C|1505
*
8CDL|1|AA|G|1513
8CDL|1|AA|G|1514
8CDL|1|AA|A|1515
8CDL|1|AA|C|1516
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain D
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L39
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