IL_8CDL_078

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AAUAA(OMU)G*C(OMU)AU

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_078 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.0785

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8CDL|1|AA|A|1883
8CDL|1|AA|A|1884
8CDL|1|AA|U|1885
8CDL|1|AA|A|1886
8CDL|1|AA|A|1887
8CDL|1|AA|OMU|1888
8CDL|1|AA|G|1889
*
8CDL|1|AA|C|2346
8CDL|1|AA|OMU|2347
8CDL|1|AA|A|2348
8CDL|1|AA|U|2349

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3

Chain P

60S ribosomal protein L31-A