IL_8CDL_140
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GUA*UUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 8CDL|1|AA|G|3377
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_140 not in the Motif Atlas
- Homologous match to IL_5TBW_132
- Geometric discrepancy: 0.0852
- The information below is about IL_5TBW_132
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_84428.1
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CDL|1|AA|G|3328
8CDL|1|AA|U|3329
8CDL|1|AA|A|3330
*
8CDL|1|AA|U|3373
8CDL|1|AA|U|3374
8CDL|1|AA|A|3375
8CDL|1|AA|A|3376
8CDL|1|AA|G|3377
8CDL|1|AA|C|3378
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain FF
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L24-A
- Chain P
- 60S ribosomal protein L31-A
Coloring options: