IL_8CDL_171

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8CDL|1|c|U|313, 8CDL|1|c|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_171 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0702

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8CDL|1|c|U|311
8CDL|1|c|A|312
8CDL|1|c|U|313
8CDL|1|c|C|314
8CDL|1|c|A|315
8CDL|1|c|A|316
*
8CDL|1|c|U|348
8CDL|1|c|U|349
8CDL|1|c|U|350
8CDL|1|c|C|351
8CDL|1|c|A|352
8CDL|1|c|A|353
8CDL|1|c|C|354
8CDL|1|c|G|355

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A

Chain z

40S ribosomal protein S23-A