IL_8CDL_206
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8CDL|1|c|C|1158, 8CDL|1|c|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_206 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.0998
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
8CDL|1|c|A|1157
8CDL|1|c|C|1158
8CDL|1|c|C|1159
8CDL|1|c|A|1160
*
8CDL|1|c|U|1617
8CDL|1|c|C|1618
8CDL|1|c|C|1619
8CDL|1|c|C|1620
8CDL|1|c|U|1621
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain 4
- 40S ribosomal protein S28-A
- Chain Cc
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
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