IL_8CDR_021

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8CDR|1|AA|U|534, 8CDR|1|AA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDR_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.107

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CDR|1|AA|G|531
8CDR|1|AA|A|532
8CDR|1|AA|A|533
8CDR|1|AA|U|534
8CDR|1|AA|G|535
8CDR|1|AA|U|536
8CDR|1|AA|A|537
8CDR|1|AA|G|538
*
8CDR|1|AA|U|553
8CDR|1|AA|A|554
8CDR|1|AA|U|555
8CDR|1|AA|U|556
8CDR|1|AA|A|557
8CDR|1|AA|U|558
8CDR|1|AA|A|559
8CDR|1|AA|G|560
8CDR|1|AA|C|561

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L20-A

Chain PP

60S ribosomal protein L14-A