IL_8CDR_196

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGUU*AUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDR_196 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2066

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8CDR|1|c|C|818
8CDR|1|c|G|819
8CDR|1|c|U|820
8CDR|1|c|U|821
*
8CDR|1|c|A|850
8CDR|1|c|U|851
8CDR|1|c|C|852
8CDR|1|c|G|853

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain k

40S ribosomal protein S7-A