IL_8CDU_020
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8CDU|1|A|A|541, 8CDU|1|A|U|543, 8CDU|1|A|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDU_020 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1702
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CDU|1|A|G|524
8CDU|1|A|U|525
8CDU|1|A|G|526
8CDU|1|A|C|527
8CDU|1|A|C|528
8CDU|1|A|A|529
8CDU|1|A|G|530
*
8CDU|1|A|C|537
8CDU|1|A|G|538
8CDU|1|A|G|539
8CDU|1|A|U|540
8CDU|1|A|A|541
8CDU|1|A|A|542
8CDU|1|A|U|543
8CDU|1|A|A|544
8CDU|1|A|C|545
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S3
- Chain F
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
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