IL_8CDU_026
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAAGCC*GAGGG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDU_026 not in the Motif Atlas
- Geometric match to IL_5J7L_030
- Geometric discrepancy: 0.23
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8CDU|1|A|U|614
8CDU|1|A|G|615
8CDU|1|A|A|616
8CDU|1|A|A|617
8CDU|1|A|A|618
8CDU|1|A|G|619
8CDU|1|A|C|620
8CDU|1|A|C|621
*
8CDU|1|A|G|637
8CDU|1|A|A|638
8CDU|1|A|G|639
8CDU|1|A|G|640
8CDU|1|A|G|641
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S4
- Chain I
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S16
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