IL_8CDU_032

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCG,CGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_032 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.1846

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8CDU|1|A|G|778
8CDU|1|A|C|779
8CDU|1|A|G|780
*
8CDU|1|A|C|817
8CDU|1|A|G|818
8CDU|1|A|C|819

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S15