IL_8CDU_047
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAG*CCAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8CDU|1|A|A|1289
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDU_047 not in the Motif Atlas
- Homologous match to IL_6CZR_161
- Geometric discrepancy: 0.2733
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CDU|1|A|G|1264
8CDU|1|A|C|1265
8CDU|1|A|A|1266
8CDU|1|A|G|1267
*
8CDU|1|A|C|1286
8CDU|1|A|C|1287
8CDU|1|A|A|1288
8CDU|1|A|A|1289
8CDU|1|A|U|1290
8CDU|1|A|C|1291
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S3
- Chain K
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
Coloring options: