IL_8CEH_198

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8CEH|1|c|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEH_198 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.0701

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8CEH|1|c|C|874
8CEH|1|c|G|875
8CEH|1|c|G|876
8CEH|1|c|G|877
8CEH|1|c|G|878
*
8CEH|1|c|C|950
8CEH|1|c|A|951
8CEH|1|c|A|952
8CEH|1|c|G|953

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 2

40S ribosomal protein S26

Chain e

40S ribosomal protein S1-A

Chain p

40S ribosomal protein S13