3D structure

PDB id
8CEP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Round2 30S head (no antibiotic)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.04 Å

Loop

Sequence
AAGAAG*CCACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CEP_043 not in the Motif Atlas
Homologous match to IL_5J7L_063
Geometric discrepancy: 0.0839
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

8CEP|1|A|A|1430
8CEP|1|A|A|1431
8CEP|1|A|G|1432
8CEP|1|A|A|1433
8CEP|1|A|A|1434
8CEP|1|A|G|1435
*
8CEP|1|A|C|1466
8CEP|1|A|C|1467
8CEP|1|A|A|1468
8CEP|1|A|C|1469
8CEP|1|A|U|1470

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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