IL_8CEU_070

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8CEU|1|a|A|1801, 8CEU|1|a|C|1816, 8CEU|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEU_070 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0401

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8CEU|1|a|U|1798
8CEU|1|a|G|1799
8CEU|1|a|C|1800
8CEU|1|a|A|1801
8CEU|1|a|A|1802
8CEU|1|a|A|1803
8CEU|1|a|C|1804
*
8CEU|1|a|G|1813
8CEU|1|a|G|1814
8CEU|1|a|A|1815
8CEU|1|a|C|1816
8CEU|1|a|G|1817
8CEU|1|a|U|1818
8CEU|1|a|A|1819
8CEU|1|a|U|1820
8CEU|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain I

Capreomycin IA

Chain c

Large ribosomal subunit protein uL2