IL_8CF1_020

3D structure

PDB id

8CF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF1_020 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0815

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8CF1|1|A|C|1303
8CF1|1|A|G|1304
8CF1|1|A|G|1305
8CF1|1|A|A|1306
8CF1|1|A|U|1307
8CF1|1|A|U|1308
*
8CF1|1|A|A|1329
8CF1|1|A|U|1330
8CF1|1|A|G|1331
8CF1|1|A|A|1332
8CF1|1|A|A|1333
8CF1|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13