IL_8CF5_054
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 8CF5|1|AA|U|1191, 8CF5|1|AA|C|1192, 8CF5|1|AA|C|1316, 8CF5|1|AA|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_054 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.0888
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CF5|1|AA|C|1187
8CF5|1|AA|U|1188
8CF5|1|AA|C|1189
8CF5|1|AA|A|1190
8CF5|1|AA|U|1191
8CF5|1|AA|C|1192
8CF5|1|AA|A|1193
8CF5|1|AA|G|1194
*
8CF5|1|AA|C|1314
8CF5|1|AA|U|1315
8CF5|1|AA|C|1316
8CF5|1|AA|A|1317
8CF5|1|AA|A|1318
8CF5|1|AA|G|1319
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain E
- 60S ribosomal protein L20-A
- Chain LL
- RPL9A isoform 1
- Chain PP
- 60S ribosomal protein L14-A
- Chain Y
- Ubiquitin-60S ribosomal protein L40
Coloring options: