3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
GUCAAC*GGAC
Length
10 nucleotides
Bulged bases
8CF5|1|AA|G|1514
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF5_065 not in the Motif Atlas
Homologous match to IL_5TBW_062
Geometric discrepancy: 0.0964
The information below is about IL_5TBW_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_51005.1
Basepair signature
cWW-L-R-tWH-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8CF5|1|AA|G|1500
8CF5|1|AA|U|1501
8CF5|1|AA|C|1502
8CF5|1|AA|A|1503
8CF5|1|AA|A|1504
8CF5|1|AA|C|1505
*
8CF5|1|AA|G|1513
8CF5|1|AA|G|1514
8CF5|1|AA|A|1515
8CF5|1|AA|C|1516

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain B
60S ribosomal protein L17-A
Chain D
60S ribosomal protein L19-A
Chain X
60S ribosomal protein L39

Coloring options:


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