IL_8CF5_065
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- 8CF5|1|AA|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_065 not in the Motif Atlas
- Homologous match to IL_5TBW_062
- Geometric discrepancy: 0.0964
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8CF5|1|AA|G|1500
8CF5|1|AA|U|1501
8CF5|1|AA|C|1502
8CF5|1|AA|A|1503
8CF5|1|AA|A|1504
8CF5|1|AA|C|1505
*
8CF5|1|AA|G|1513
8CF5|1|AA|G|1514
8CF5|1|AA|A|1515
8CF5|1|AA|C|1516
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain D
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L39
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