IL_8CF5_071

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_071 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.142

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8CF5|1|AA|U|1645
8CF5|1|AA|G|1646
8CF5|1|AA|A|1647
8CF5|1|AA|A|1648
8CF5|1|AA|U|1649
*
8CF5|1|AA|A|1806
8CF5|1|AA|G|1807
8CF5|1|AA|G|1808
8CF5|1|AA|A|1809
8CF5|1|AA|A|1810

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain L

60S ribosomal protein L27-A

Chain S

60S ribosomal protein L34-A