IL_8CF5_078

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

AAUAA(OMU)G*C(OMU)AU

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_078 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.0924

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8CF5|1|AA|A|1883
8CF5|1|AA|A|1884
8CF5|1|AA|U|1885
8CF5|1|AA|A|1886
8CF5|1|AA|A|1887
8CF5|1|AA|OMU|1888
8CF5|1|AA|G|1889
*
8CF5|1|AA|C|2346
8CF5|1|AA|OMU|2347
8CF5|1|AA|A|2348
8CF5|1|AA|U|2349

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3

Chain P

60S ribosomal protein L31-A