IL_8CF5_215
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8CF5|1|c|U|1432, 8CF5|1|c|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_215 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1082
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8CF5|1|c|U|1276
8CF5|1|c|G|1277
8CF5|1|c|G|1278
*
8CF5|1|c|U|1430
8CF5|1|c|C|1431
8CF5|1|c|U|1432
8CF5|1|c|G|1433
8CF5|1|c|U|1434
8CF5|1|c|G|1435
8CF5|1|c|A|1436
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain g
- RPS3 isoform 1
- Chain n
- 40S ribosomal protein S10-A
- Chain w
- 40S ribosomal protein S20
Coloring options: