IL_8CF5_261
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8CF5|1|c|C|1274, 8CF5|1|c|U|1432, 8CF5|1|c|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_261 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0815
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8CF5|1|c|U|1272
8CF5|1|c|G|1273
8CF5|1|c|C|1274
8CF5|1|c|A|1275
8CF5|1|c|U|1276
8CF5|1|c|G|1277
8CF5|1|c|G|1278
*
8CF5|1|c|U|1430
8CF5|1|c|C|1431
8CF5|1|c|U|1432
8CF5|1|c|G|1433
8CF5|1|c|U|1434
8CF5|1|c|G|1435
8CF5|1|c|A|1436
8CF5|1|c|U|1437
8CF5|1|c|G|1438
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain Bb
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain g
- RPS3 isoform 1
- Chain n
- 40S ribosomal protein S10-A
- Chain w
- 40S ribosomal protein S20
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