IL_8CG8_070
3D structure
- PDB id
- 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- UGAAU*AGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CG8_070 not in the Motif Atlas
- Homologous match to IL_5TBW_067
- Geometric discrepancy: 0.133
- The information below is about IL_5TBW_067
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8CG8|1|AA|U|1645
8CG8|1|AA|G|1646
8CG8|1|AA|A|1647
8CG8|1|AA|A|1648
8CG8|1|AA|U|1649
*
8CG8|1|AA|A|1806
8CG8|1|AA|G|1807
8CG8|1|AA|G|1808
8CG8|1|AA|A|1809
8CG8|1|AA|A|1810
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain EE
- 60S ribosomal protein L2-A
- Chain KK
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L27-A
- Chain S
- 60S ribosomal protein L34-A
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