IL_8CGD_097

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8CGD|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_097 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8CGD|1|a|C|2636
8CGD|1|a|U|2637
8CGD|1|a|G|2638
8CGD|1|a|A|2639
8CGD|1|a|G|2640
*
8CGD|1|a|C|2774
8CGD|1|a|G|2775
8CGD|1|a|A|2776
8CGD|1|a|G|2777
8CGD|1|a|A|2778
8CGD|1|a|U|2779
8CGD|1|a|G|2780
8CGD|1|a|A|2781
8CGD|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13