IL_8CGI_017

3D structure

PDB id

8CGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pentacycline TP038 bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGI_017 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.089

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8CGI|1|A|C|1303
8CGI|1|A|G|1304
8CGI|1|A|G|1305
8CGI|1|A|A|1306
8CGI|1|A|U|1307
8CGI|1|A|U|1308
*
8CGI|1|A|A|1329
8CGI|1|A|U|1330
8CGI|1|A|G|1331
8CGI|1|A|A|1332
8CGI|1|A|A|1333
8CGI|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13