IL_8CGJ_023

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

AGUA*UGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGJ_023 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2791

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8CGJ|1|A|A|456
8CGJ|1|A|G|457
8CGJ|1|A|U|458
8CGJ|1|A|A|459
*
8CGJ|1|A|U|473
8CGJ|1|A|G|474
8CGJ|1|A|C|475
8CGJ|1|A|U|476

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16