IL_8CGJ_030

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

8CGJ|1|A|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGJ_030 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.053

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8CGJ|1|A|U|605
8CGJ|1|A|G|606
8CGJ|1|A|A|607
8CGJ|1|A|A|608
8CGJ|1|A|A|609
8CGJ|1|A|U|610
8CGJ|1|A|C|611
8CGJ|1|A|C|612
*
8CGJ|1|A|G|628
8CGJ|1|A|A|629
8CGJ|1|A|A|630
8CGJ|1|A|C|631
8CGJ|1|A|U|632
8CGJ|1|A|G|633

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain H

Small ribosomal subunit protein uS8

Chain P

30S ribosomal protein S16

Chain Q

Small ribosomal subunit protein uS17