IL_8CGJ_035

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8CGJ|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGJ_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0577

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8CGJ|1|A|U|684
8CGJ|1|A|G|685
8CGJ|1|A|U|686
8CGJ|1|A|A|687
8CGJ|1|A|G|688
*
8CGJ|1|A|C|699
8CGJ|1|A|G|700
8CGJ|1|A|U|701
8CGJ|1|A|A|702
8CGJ|1|A|G|703
8CGJ|1|A|A|704
8CGJ|1|A|G|705
8CGJ|1|A|A|706

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11