IL_8CGN_021

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8CGN|1|AA|U|534, 8CGN|1|AA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1075

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CGN|1|AA|G|531
8CGN|1|AA|A|532
8CGN|1|AA|A|533
8CGN|1|AA|U|534
8CGN|1|AA|G|535
8CGN|1|AA|U|536
8CGN|1|AA|A|537
8CGN|1|AA|G|538
*
8CGN|1|AA|U|553
8CGN|1|AA|A|554
8CGN|1|AA|U|555
8CGN|1|AA|U|556
8CGN|1|AA|A|557
8CGN|1|AA|U|558
8CGN|1|AA|A|559
8CGN|1|AA|G|560
8CGN|1|AA|C|561

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L20-A

Chain PP

60S ribosomal protein L14-A