IL_8CGN_071

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_071 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.0922

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8CGN|1|AA|U|1645
8CGN|1|AA|G|1646
8CGN|1|AA|A|1647
8CGN|1|AA|A|1648
8CGN|1|AA|U|1649
*
8CGN|1|AA|A|1806
8CGN|1|AA|G|1807
8CGN|1|AA|G|1808
8CGN|1|AA|A|1809
8CGN|1|AA|A|1810

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain L

60S ribosomal protein L27-A

Chain S

60S ribosomal protein L34-A