IL_8CGN_086
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8CGN|1|AA|U|2159, 8CGN|1|AA|U|2175, 8CGN|1|AA|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGN_086 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0723
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CGN|1|AA|C|2156
8CGN|1|AA|G|2157
8CGN|1|AA|A|2158
8CGN|1|AA|U|2159
8CGN|1|AA|G|2160
8CGN|1|AA|G|2161
*
8CGN|1|AA|U|2173
8CGN|1|AA|G|2174
8CGN|1|AA|U|2175
8CGN|1|AA|U|2176
8CGN|1|AA|G|2177
8CGN|1|AA|A|2178
8CGN|1|AA|C|2179
8CGN|1|AA|G|2180
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain EE
- 60S ribosomal protein L2-A
- Chain b
- 60S ribosomal protein L43-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
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