IL_8CGR_013

3D structure

PDB id

8CGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apramycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8CGR|1|A|U|244, 8CGR|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGR_013 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0893

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8CGR|1|A|G|242
8CGR|1|A|A|243
8CGR|1|A|U|244
8CGR|1|A|U|245
8CGR|1|A|A|246
8CGR|1|A|G|247
*
8CGR|1|A|C|277
8CGR|1|A|G|278
8CGR|1|A|A|279
8CGR|1|A|C|280
8CGR|1|A|G|281
8CGR|1|A|A|282
8CGR|1|A|U|283
8CGR|1|A|C|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17