3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
8CGR|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGR_033 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.0592
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

8CGR|1|A|U|684
8CGR|1|A|G|685
8CGR|1|A|U|686
8CGR|1|A|A|687
8CGR|1|A|G|688
*
8CGR|1|A|C|699
8CGR|1|A|G|700
8CGR|1|A|U|701
8CGR|1|A|A|702
8CGR|1|A|G|703
8CGR|1|A|A|704
8CGR|1|A|G|705
8CGR|1|A|A|706

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
Small ribosomal subunit protein uS11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2276 s