3D structure

PDB id
8CGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tiamulin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.66 Å

Loop

Sequence
CUGAG*CGAGAUGAG
Length
14 nucleotides
Bulged bases
8CGV|1|a|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CGV_096 not in the Motif Atlas
Homologous match to IL_5J7L_345
Geometric discrepancy: 0.0509
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

8CGV|1|a|C|2636
8CGV|1|a|U|2637
8CGV|1|a|G|2638
8CGV|1|a|A|2639
8CGV|1|a|G|2640
*
8CGV|1|a|C|2774
8CGV|1|a|G|2775
8CGV|1|a|A|2776
8CGV|1|a|G|2777
8CGV|1|a|A|2778
8CGV|1|a|U|2779
8CGV|1|a|G|2780
8CGV|1|a|A|2781
8CGV|1|a|G|2782

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain i
Large ribosomal subunit protein uL13

Coloring options:


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