IL_8CIV_046

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_046 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.3521

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8CIV|1|AA|U|1014
8CIV|1|AA|U|1015
8CIV|1|AA|C|1016
8CIV|1|AA|C|1017
8CIV|1|AA|G|1018
*
8CIV|1|AA|U|1034
8CIV|1|AA|G|1035
8CIV|1|AA|A|1036

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain HH

60S ribosomal protein L5

Chain NN

60S ribosomal protein L11-A