IL_8CIV_070

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8CIV|1|AA|U|1820, 8CIV|1|AA|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_070 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.1484

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8CIV|1|AA|G|1623
8CIV|1|AA|G|1624
*
8CIV|1|AA|U|1819
8CIV|1|AA|U|1820
8CIV|1|AA|U|1821
8CIV|1|AA|C|1822

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L34-A

Chain W

60S ribosomal protein L38