IL_8CIV_071

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

8CIV|1|AA|U|1629, 8CIV|1|AA|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_071 not in the Motif Atlas

Homologous match to IL_5TBW_066

Geometric discrepancy: 0.164

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8CIV|1|AA|U|1627
8CIV|1|AA|C|1628
8CIV|1|AA|U|1629
8CIV|1|AA|U|1630
8CIV|1|AA|C|1631
*
8CIV|1|AA|G|1811
8CIV|1|AA|G|1812
8CIV|1|AA|A|1813
8CIV|1|AA|A|1814
8CIV|1|AA|U|1815
8CIV|1|AA|A|1816

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L27-A