IL_8CIV_082

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8CIV|1|AA|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CIV_082 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.082

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8CIV|1|AA|A|1901
8CIV|1|AA|G|1902
8CIV|1|AA|U|1903
8CIV|1|AA|C|1904
8CIV|1|AA|G|1905
8CIV|1|AA|G|1906
*
8CIV|1|AA|C|2333
8CIV|1|AA|U|2334
8CIV|1|AA|G|2335
8CIV|1|AA|U|2336

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A